yojM [2018-11-07 16:49:44]

superoxide dismutase

locus: BSU19400

pI: 5.64

mw: 20.81 kDa

protein length: 196 aa

gene length: 588 bp

function: unknown

product: superoxide dismutase

essential: no

synonyms

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.8|Resistance against oxidative and electrophile stress]

Gene

Coordinates: 2,114,742 → 2,115,332

The protein

Protein family

• alpha-ketoglutarate dehydrogenase family (according to Swiss-Prot)

[SW|Cofactors]

• zinc

Structure

• [PDB|1XTL] [Pubmed|15897454]

Expression and Regulation

Operons

• genes: [gene|0FBE3F7ECACA7FCFAA4EE32E9B2BB35F0B793C0F|cwlS]-[gene|3B45734D18D01BAB6D244DE3547C84F9488075FB|yojM]
  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-B423 (yojM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1422 NBRP B. subtilis, Japan]
• BKE19400 (Δ[gene|3B45734D18D01BAB6D244DE3547C84F9488075FB|yojM]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE19400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACTGTCTCCCCCTTGTT, downstream forward: _UP4_TAATATCATCCAGGCCCTTT
• BKK19400 (Δ[gene|3B45734D18D01BAB6D244DE3547C84F9488075FB|yojM]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK19400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACTGTCTCCCCCTTGTT, downstream forward: _UP4_TAATATCATCCAGGCCCTTT

References

• 15897454